SNP Profiles of AMAZ 5/2 [CHA] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	TT	CC	GG	GG	AT	GG	TT	AA	GG	CC	CT	AG	CC
1._RUQ_93	_	_	CC	_	_	_	_	TT	_	_	_	_	_	_
2._AMAZ_5_/2	_	_	CC	_	_	_	_	TT	_	_	CC	_	AG	_
3._AMAZ_5_/2	_	_	CC	_	_	_	_	TT	_	_	CC	_	AG	_
4._AMAZ_5_/2	_	_	CC	_	_	_	_	TT	_	_	CC	_	AG	_
5._AMAZ_5_/2	_	_	CC	_	_	_	_	TT	_	_	CC	_	AG	_
6._RUQ_93	_	_	CC	_	_	_	_	TT	_	_	CC	_	AG	_
7._GC-03-008-1-08	_	_	CC	_	_	_	_	TT	_	_	CC	_	AG	_
8._GC-03-008-1-08	_	_	CC	_	_	_	_	TT	_	_	CC	_	AG	_
9._GC-03-008-1-08	_	_	CC	_	_	_	_	TT	_	_	CC	_	AG	_
10._GC-03-008-1-08	_	_	CC	_	_	_	_	TT	_	_	CC	_	AG	_
11._AMAZ_5_/2	_	_	GG	_	_	_	_	TT	_	_	TT	_	AA	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	CC	AA	CG	GG	CC	TT	AA	CC	TT	CC	AA	GG
1._RUQ_93	_	_	CC	AA	_	GG	CC	_	_	CC	_	_	AA	GG
2._AMAZ_5_/2	_	_	_	AA	_	_	CC	_	_	_	_	_	_	GG
3._AMAZ_5_/2	_	_	_	AA	_	_	CC	_	_	_	_	_	_	GG
4._AMAZ_5_/2	_	_	_	AA	_	_	CC	_	_	_	_	_	_	GG
5._AMAZ_5_/2	_	_	_	AA	_	_	CC	_	_	_	_	_	_	GG
6._RUQ_93	_	_	_	AA	_	_	CC	_	_	_	_	_	_	GG
7._GC-03-008-1-08	_	_	CC	AA	_	GG	CC	CC	_	CC	_	_	AA	GG
8._GC-03-008-1-08	_	_	CC	AA	_	GG	CC	CC	_	CC	_	_	AA	GG
9._GC-03-008-1-08	_	_	CC	AA	_	GG	CC	CC	_	CC	_	_	AA	GG
10._GC-03-008-1-08	_	_	CC	AA	_	GG	CC	CC	_	CC	_	_	AA	GG
11._AMAZ_5_/2	_	_	_	GG	_	_	GG	_	_	_	_	_	_	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	CG	AA	CC	GG	TT	CT	AA	TT	GG	AA	CC	CC	AA
1._RUQ_93	TT	_	_	_	_	_	CT	AA	_	GG	_	CC	_	_
2._AMAZ_5_/2	_	_	AA	_	_	_	_	AA	_	GG	_	CC	_	_
3._AMAZ_5_/2	_	_	AA	_	_	_	_	AA	_	GG	_	CC	_	_
4._AMAZ_5_/2	_	_	AA	_	_	_	_	AA	_	GG	_	CC	_	_
5._AMAZ_5_/2	_	_	AA	_	_	_	_	AA	_	GG	_	CC	_	_
6._RUQ_93	_	_	AA	_	_	_	_	AA	_	GG	_	CC	_	_
7._GC-03-008-1-08	TT	_	AA	_	_	_	CT	AA	_	GG	_	CC	_	_
8._GC-03-008-1-08	TT	_	AA	_	_	_	CT	AA	_	GG	_	CC	_	_
9._GC-03-008-1-08	TT	_	AA	_	_	_	CT	AA	_	GG	_	CC	_	_
10._GC-03-008-1-08	TT	_	AA	_	_	_	CT	AA	_	GG	_	CC	_	_
11._AMAZ_5_/2	_	_	AA	_	_	_	_	AA	_	CC	_	CC	_	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	AC	GG	AA	TT	AA	GT	GG	TT	AA	AA	TT	GG	CC
1._RUQ_93	_	_	GG	_	_	AA	_	_	_	AA	_	_	_	_
2._AMAZ_5_/2	_	_	_	_	_	AA	_	_	_	AA	_	_	_	_
3._AMAZ_5_/2	_	_	_	_	_	AA	_	_	_	AA	_	_	_	_
4._AMAZ_5_/2	_	_	_	_	_	AA	_	_	_	AA	_	_	_	_
5._AMAZ_5_/2	_	_	_	_	_	AA	_	_	_	AA	_	_	_	_
6._RUQ_93	_	_	_	_	_	AA	_	_	_	AA	_	_	_	_
7._GC-03-008-1-08	_	_	GG	_	_	AA	_	_	_	AA	_	_	_	_
8._GC-03-008-1-08	_	_	GG	_	_	AA	_	_	_	AA	_	_	_	_
9._GC-03-008-1-08	_	_	GG	_	_	AA	_	_	_	AA	_	_	_	_
10._GC-03-008-1-08	_	_	GG	_	_	AA	_	_	_	AA	_	_	_	_
11._AMAZ_5_/2	_	_	_	_	_	AA	_	_	_	CC	_	_	_	_

	57	58	59
_Input profile	TT	AC	CT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_93	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._AMAZ_5_/2	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._AMAZ_5_/2	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._AMAZ_5_/2	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._AMAZ_5_/2	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._RUQ_93	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-03-008-1-08	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-03-008-1-08	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-03-008-1-08	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-03-008-1-08	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._AMAZ_5_/2	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: AMAZ_5_/2 RUQ_93

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._AMAZ_5_/2 RUQ_93

identical
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._AMAZ_5_/2

identical
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 9 > FP

Dapeng Zhang, 2016

3._AMAZ_5_/2

identical
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 8 > FP

Dapeng Zhang, 2016

4._AMAZ_5_/2

identical
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 5

Dapeng Zhang, 2016

5._AMAZ_5_/2

identical
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3108 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._AMAZ_5_/2 RUQ_93

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

7._AMAZ_5_/2 GC-03-008-1-08

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._AMAZ_5_/2 GC-03-008-1-08

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

9._AMAZ_5_/2 GC-03-008-1-08

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

10._AMAZ_5_/2 GC-03-008-1-08

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP1

11._AMAZ_5_/2

50 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A20 T1

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1230	10	TcSNP1205
11	TcSNP1144	12	TcSNP1112	13	TcSNP1062	14	TcSNP1053	15	TcSNP1019
16	TcSNP1010	17	TcSNP999	18	TcSNP998	19	TcSNP945	20	TcSNP899
21	TcSNP872	22	TcSNP836	23	TcSNP835	24	TcSNP823	25	TcSNP800
26	TcSNP739	27	TcSNP731	28	TcSNP723	29	TcSNP702	30	TcSNP660
31	TcSNP645	32	TcSNP644	33	TcSNP642	34	TcSNP640	35	TcSNP602
36	TcSNP591	37	TcSNP589	38	TcSNP577	39	TcSNP546	40	TcSNP529
41	TcSNP522	42	TcSNP519	43	TcSNP421	44	TcSNP363	45	TcSNP329
46	TcSNP305	47	TcSNP290	48	TcSNP230	49	TcSNP194	50	TcSNP189
51	TcSNP176	52	TcSNP144	53	TcSNP143	54	TcSNP131	55	TcSNP52
56	TcSNP49	57	TcSNP33	58	TcSNP19	59	TcSNP13